Aligning Standards Communities: Sustainable Darwin Core MIxS Interoperability

نویسندگان

چکیده

Biodiversity is increasingly being assessed using omic technologies (e.g. metagenomics or metatranscriptomics); however, the metadata generated by investigations not fully harmonised with that of broader biodiversity community. There are two major communities developing standards specifications relevant to data: TDWG, through its Darwin Core (DwC) standard, and Genomic Standard Consortium (GSC), Minimum Information about any (x) Sequence (MIxS) checklists. To prevent these leading silos between them INSDC: an internationally mandated database collaboration for nucleotide sequencing data [from health, biodiversity, microbiology, etc.] MIxS checklists; OBIS GBIF: global networks DwC standard), there a need harmonise at level organisations themselves. this end, we have brought together representatives from standardisation bodies, along established infrastructures, domain experts, generators, publishers develop sustainable interoperability specifications. Together, have: semantic mapping terminology used in each specification, syntactic their associated values following Simple Sharing Ontology Mappings (SSSOM), created example MIxS-DwC extension showing incorporation unmapped terms into DwC-Archive. sustain mechanisms interoperability, proposed Memorandum Understanding GSC TDWG. During our work, also noted number key challenges currently preclude interoperation In talk, will outline steps took get here, as well future activities recommend based on outputs.

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ژورنال

عنوان ژورنال: Biodiversity Information Science and Standards

سال: 2021

ISSN: ['2535-0897']

DOI: https://doi.org/10.3897/biss.5.73775